Fagområder
Virologi; Bioinformatikk; NGS
Prosjekter og publikasjoner
- Jon Bråte, Andrej Ondracka, Omaya Dudin, (2022). Time-resolved small RNA transcriptomics of the ichthyosporean Sphaeroforma arctica. Research Square doi: 10.21203/rs.3.rs-2167455/v1
- Line Victoria Moen, Hilde Synnøve Vollan, Jon Bråte, Olav Hungnes, Karoline Bragstad, (2022). Molecular Epidemiology of the Norwegian SARS-CoV-2 Delta Lineage AY.63. Viruses s. 1-11. doi: 10.3390/v14122734
- Magnus Nygård Osnes, Kristian Alfsnes, Jon Bråte, Ignacio Garcia Llorente, Rasmus Kopperud Riis, Kamilla Heddeland Instefjord, Hilde Elshaug, Hilde Synnøve Vollan, Line Victoria Moen, Benedikte Nevjen Pedersen, Dominique Andree Yvette Caugant, Kathrine Stene-Johansen, Olav Hungnes, Karoline Bragstad, Ola Brønstad Brynildsrud, Vegard Eldholm, (2021). The impact of global lineage dynamics, border restrictions, and emergence of the B.1.1.7 lineage on the SARS-CoV-2 epidemic in Norway. Virus Evolution s. 1-7. doi: 10.1093/ve/veab086
- Ina J. Andresen, Russell John Scott Orr, Kamran Shalchian-Tabrizi, Jon Bråte, (2021). Compartmentalization of mRNAs in the giant, unicellular green alga Acetabularia acetabulum. Algal Research doi: 10.1016/j.algal.2021.102440
- Ina Jungersen Andresen, Russell John Scott Orr, Anders Kristian Krabberød, Kamran Shalchian-Tabrizi, Jon Bråte, (2021). Genome sequencing and de novo assembly of the giant unicellular alga Acetabularia acetabulum using droplet MDA. Scientific Reports doi: 10.1038/s41598-021-92092-4
- Øyvind Sætren Gulbrandsen, Ina Jungersen Andresen, Anders Kristian Krabberød, Jon Bråte, Kamran Shalchian-Tabrizi, (2021). Phylogenomic analysis restructures the Ulvophyceae. Journal of Phycology s. 1223-1233. doi: 10.1111/jpy.13168
- Omaya Dudin, Andrej Ondracka, Xavier Grau-Bové, Arthur Alexander Blørstad Haraldsen, Atsushi Toyoda, Hiroshi Suga, Jon Bråte, Iñaki Ruiz-Trillo, (2019). A unicellular relative of animals generates a layer of polarized cells by actomyosin-dependent cellularization. eLIFE s. 1-27. doi: 10.7554/eLife.49801
- Omaya Dudin, Andrej Ondracka, Xavier Grau-Bové, Arthur Alexander Blørstad Haraldsen, Atsushi Toyoda, Hiroshi Suga, Jon Bråte, Iñaki Ruiz-Trillo, (2019). A unicellular relative of animals generates an epithelium-like cell layer by actomyosin-dependent cellularization. BioRxiv doi: 10.1101/563726
- Jon Bråte, Janina Fuss, Shruti Mehrotra, Kjetill Sigurd Jakobsen, Dag Klaveness, (2019). Draft genome assembly and transcriptome sequencing of the golden algae Hydrurus foetidus (Chrysophyceae). F1000 Research s. 1-12. doi: 10.12688/f1000research.16734.3
- Jon Bråte, Ralf Stefan Neumann, Bastian Fromm, Arthur Alexander Blørstad Haraldsen, James E. Tarver, Hiroshi Suga, Philip C.J. Donoghue, Kevin J. Peterson, Iñaki Ruiz-Trillo, Paul Eivind Grini, Kamran Shalchian-Tabrizi, (2018). Unicellular origin of the animal microRNA machinery. Current Biology s. 3288-3295.e5. doi: 10.1016/j.cub.2018.08.018
- Anders Kristian Krabberød, Russell Orr, Jon Bråte, Tom Kristensen, Kjell Rasmus Bjørklund, Kamran Shalchian-Tabrizi, (2017). Single cell transcriptomics, mega-phylogeny and the genetic basis of morphological innovations in Rhizaria. Molecular Biology and Evolution (MBE) doi: 10.1093/molbev/msx075
- Jon Bråte, Marcin Adamski, Ralf Stefan Neumann, Kamran Shalchian-Tabrizi, Maja Adamska, (2015). Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum. Proceedings of the Royal Society of London. Biological Sciences s. 1-9. doi: 10.1098/rspb.2015.1746
- Sven Dirk Leininger, Marcin Adamski, Brith Bergum, Corina Guder, Jing Liu, Mary Laplante, Jon Bråte, Friederike Hoffmann, Sofia A Valero Fortunato, Signe Jordal, Hans Tore Rapp, Maja Adamska, (2014). Developmental gene expression provides clues to relationships between sponge and eumetazoan body plans. Nature Communications doi: 10.1038/ncomms4905
- Jon Bråte, Anders Kristian Krabberød, Jane Karine Lønne Dolven, Randi Frida Ose, Tom Kristensen, Kjell Rasmus Bjørklund, Kamran Shalchian-Tabrizi, (2012). Radiolaria Associated with Large Diversity of Marine Alveolates. Protist s. 767-777. doi: 10.1016/j.protis.2012.04.004
- Sen Zhao, Fabien Burki, Jon Bråte, Patrick J Keeling, Dag Klaveness, Kamran Shalchian-Tabrizi, (2012). Collodictyon - An Ancient Lineage in the Tree of Eukaryotes. Molecular Biology and Evolution (MBE) s. 1557-1568. doi: 10.1093/molbev/mss001
- Dag Klaveness, Jon Bråte, Viswanath Patil, Kamran Shalchian-Tabrizi, Ragnhild Kluge, Hans Ragnar Gislerød, Kjetill Sigurd Jakobsen, (2011). The 18S and 28S rDNA indentity and phylogeny of the common lotic chrysophyte Hydrurus foetidus. European journal of phycology s. 282-291. doi: 10.1080/09670262.2011.598950
- Anders Kristian Krabberød, Jon Bråte, Jane Karine Lønne Dolven, Randi Frida Ose, Dag Klaveness, Tom Kristensen, Kjell Rasmus Bjørklund, Kamran Shalchian-Tabrizi, (2011). Radiolaria Divided into Polycystina and Spasmaria in Combined 18S and 28S rDNA Phylogeny. PLOS ONE doi: 10.1371/journal.pone.0023526
- Kamran Shalchian-Tabrizi, Kjetil Røberg, Dan Kristofer Ree, Dag Klaveness, Jon Bråte, (2011). Marine-Freshwater Colonizations of Haptophytes Inferred from Phylogeny of Environmental 18S rDNA Sequences. Journal of Eukaryotic Microbiology s. 315-318. doi: 10.1111/j.1550-7408.2011.00547.x
- Jon Bråte, Dag Klaveness, T Rygh, Kjetill Sigurd Jakobsen, Kamran Shalchian-Tabrizi, (2010). Telonemia-specific environmental 18S rDNA PCR reveals unknown diversity and multiple marine-freshwater colonizations. BMC Microbiology doi: 10.1186/1471-2180-10-168
- Ramiro Logares, Jon Bråte, F Heinrich, Kamran Shalchian-Tabrizi, Stefan Bertilsson, (2010). Infrequent Transitions between Saline and Fresh Waters in One of the Most Abundant Microbial Lineages (SAR11). Molecular Biology and Evolution (MBE) s. 347-357. doi: 10.1093/molbev/msp239
- Jon Bråte, Ramiro Logares, Cedric Berney, Dan Kristofer Ree, Dag Klaveness, Kjetill Sigurd Jakobsen, Kamran Shalchian-Tabrizi, (2010). Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA. The ISME Journal s. 1144-1153. doi: 10.1038/ismej.2010.39
- Ramiro Logares, Jon Bråte, Stefan Bertilsson, Jessica L Clasen, Kamran Shalchian-Tabrizi, Karin Rengefors, (2009). Infrequent marine-freshwater transitions in the microbial world. Trends in Microbiology s. 414-422. doi: 10.1016/j.tim.2009.05.010
- Ramiro Logares, Jon Bråte, Heinrich Friederike, Kamran Shalchian-Tabrizi, Stefan Bertilsson, (2009). Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11). Molecular Biology and Evolution (MBE) doi: 10.1093/molbev/msp239
- Fabien Burki, Yuji Inagaki, Jon Bråte, John M Archibald, Patrick J Keeling, Thomas Cavalier-Smith, Miako Sakaguchi, Tetsuo Hashimoto, Ales Horak, Surendra Kumar, Dag Klaveness, Kjetill Sigurd Jakobsen, Jan Pawlowski, Kamran Shalchian-Tabrizi, (2009). Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates. Genome Biology and Evolution (GBE) s. 231-238. doi: 10.1093/gbe/evp022
- Patil Vishwanath, Jon Bråte, Kamran Shalchian-Tabrizi, Kjetill Sigurd Jakobsen, (2009). Revisiting the Phylogenetic Position of Synchroma grande. Journal of Eukaryotic Microbiology s. 394-396.
- Kamran Shalchian-Tabrizi, Jon Bråte, R Logares, Dag Klaveness, Cedrik Berney, Kjetill Sigurd Jakobsen, (2008). Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny. Environmental Microbiology s. 2635-2644. doi: 10.1111/j.1462-2920.2008.01685.x
- Jon Bråte, (2022). SARS-CoV-2 sequencing at the Norwegian Institute of Public Health.
- Jon Bråte, (2022). Import og evolusjon av SARS-CoV-2 i Norge.
- Jon Bråte, (2019). Dyrenes opprinnelse.
- Jon Bråte, (2019). Evolution and development in single-celled eukaryotes.
- Jon Bråte, (2019). Evolution and Function of the ichthyosporean microRNA system.
- Ingrid Spilde, Jon Bråte, Kamran Shalchian-Tabrizi, (2019). Knøttlite mysterium: Hva er egentlig forskjellen på deg og en encellet skapning?.
- Jon Bråte, Yngve Vogt, (2017). Leter etter skillet mellom encellete og flercellete dyr.
- Jon Bråte, (2017). Studying protist evolution using single-cell transcriptomics.
- Jon Bråte, (2017). Single-cell transcriptomics of Sphaeroforma arctica.
- Andreas Evenstad, Line Lieblein Røsæg, Ina Jungersen Andresen, Kamran Shalchian-Tabrizi, Jon Bråte, (2016). Evolution of non-coding RNAs in ctenophores.
- Line Lieblein Røsæg, Andreas Evenstad, Ina Jungersen Andresen, Jon Bråte, Kamran Shalchian-Tabrizi, (2016). Postembryonic development of Mnemiopsis leidyi inferred from gene expression data.
- Arthur Alexander Blørstad Haraldsen, Jon Bråte, Ralf Stefan Neumann, Bastian Fromm, Paul Eivind Grini, Kamran Shalchian-Tabrizi, (2016). Pre-metazoan origin of animal microRNAs.
- Bjarne Røsjø, Jon Bråte, (2016). På spor av det første flercellede dyret.
- Hanna Elina Melteig, Jon Bråte, (2016). Omvendt kreftjakt.
- Jon Bråte, (2015). Genomets mørke materie.
- Jon Bråte, (2015). Genomets mørke materie.
- Jon Bråte, (2015). Genomets mørke materie: nye roller til ikke-kodende RNA.
- Jon Bråte, (2014). Single Cell Protistology - Work in Progress.
- Jon Bråte, (2014). Non-coding RNA and the Origin of Animals.
- Jon Bråte, (2014). Genomets mørke materie - nye roller til ikke-kodende RNA.
- Jon Bråte, (2013). Long non-coding RNAs in the sponge Sycon ciliatum.
- Jon Bråte, (2013). "Søppel-gen" gjorde folk av oss?. Aftenposten (morgenutg. : trykt utg.)
- Jon Bråte, (2013). Søppel-DNA: Hva er det og (hvorfor) trenger vi bry oss?.
- Jon Bråte, (2013). Betydningen av små RNA fragmenter for evolusjon, økologi og epigenetikk.
- Jon Bråte, (2011). 18S+28S phylogeny divides Radiolaria into Polycystina and Spasmaria and supports the Retaria hypothesis.
- Jon Bråte, (2011). Radiolaria revealed as a reservoir of Marine alveolates.
- Jon Bråte, (2011). Encellede eukaryoter - hvordan studere dem genetisk?.
- Eli-Anne Lindstrøm, Jon Bråte, Dag Klaveness, (2010). Hydrurus foetidus - a common and important cold-stenotherm (psychrophilic) primary producer.
- Jon Bråte, (2010). Lake Finsevatn sediment diversity investigated by pyrosequencing.
- Jon Bråte, Anders Kristian Krabberød, Jane Karine Lønne Dolven, Randi Frida Ose, Tom Kristensen, Kjell Rasmus Bjørklund, Kamran Shalchian-Tabrizi, (2010). Diversity of unculturable Radiolaria and their symbionts revealed by 18S rDNA phylogeny.
- Vishwanath Patil, Jon Bråte, D. Klaveness, Ragnhild Kluge, Kamaran Shalchian-Tabrizi, Hans Ragnar Gislerød, Kjetill S. Jakobsen, (2008). Molecular phylogeny of Hydrurus, a fresh water chrysophyte rich in lipids.
- Jon Bråte, (2008). Barriers to Dispersal: Few Marine - Freshwater Colonizations Revealed by Environmental Sequencing.